PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN16881.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 71aa    MW: 8335.76 Da    PI: 10.2842
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN16881.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376e-12144754
                HHHHHHHHHHHHHH.HHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH  7 erErrRRdriNsaf.eeLrellPk.askapskKlsKaeiLekAveYIksL 54
                ++ErrRR+++N+++   Lr+++P+ +      K++ a+iL  A+eY+k+L
  KHN16881.1  1 MAERRRRKKLNDRLyMLLRSVVPNiS------KMDRASILGDAIEYLKEL 44
                58***********99*********66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.30E-8149No hitNo description
Gene3DG3DSA:4.10.280.101.2E-15164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.1E-10150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-9144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.808144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-15163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    Send to blast
MAERRRRKKL NDRLYMLLRS VVPNISKMDR ASILGDAIEY LKELLQRISE LRNELESTPA  60
AVNKYSNLIC Q
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
129ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ3932254e-76FJ393225.1 Glycine max inducer of CBF expression 3 (ICE3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001238591.13e-30inducer of CBF expression 3
SwissprotQ9LSE24e-28ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A0B2Q5S04e-44A0A0B2Q5S0_GLYSO; Transcription factor ICE1
STRINGGLYMA08G01115.12e-35(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3561922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.42e-29bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]